Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
modENCODE CAGE Read Density (tss_modECAGE) Track Description
Description
These tracks show the normalized density of CAGE reads from different developmental stages of D. melanogaster.
The CAGE datasets were produced by the modENCODE project and were obtained
from the NCBI Sequence Read Archive database under the accession number SRP001602.
Methods
Each dataset was mapped to the D. melanogaster release 6 assembly using bwa with default parameters.
The alignment results were analyzed by CAGEr.
The tag counts were normalized by the normalizeTagCount function in CAGEr with the following parameters: